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Report

Friedrich Pahlke

06 September, 2025 07:49:29

report.Rmd

Install Project From GitHub 

if (!require("devtools")) {
    install.packages("devtools")    
}
devtools::install_github("fpahlke/demoProject1")

Load Project

Load Data 

data <- load_data(system.file("extdata", "data.csv", package = "demoProject1"))
data |>
    head() |>
    knitr::kable()
subject_id trt age bmi y x1 x2
1 0 35.79187 22.13903 9.941999 35.79187 22.13903
2 0 55.13767 21.98924 13.771734 55.13767 21.98924
3 0 45.06616 21.24585 20.778358 45.06616 21.24585
4 1 43.04915 20.78995 23.749046 43.04915 20.78995
5 0 30.96763 23.25136 4.069592 30.96763 23.25136
6 1 49.09945 26.32472 21.886568 49.09945 26.32472

Summarise Data 

data_clean <- filter_complete(data, "age")
summarise_parameter(data_clean, "age")
#> $param_name
#> [1] "age"
#> 
#> $mean
#> [1] 50.12918
#> 
#> $sd
#> [1] 19.25734
summarise_parameter(data_clean, "bmi")
#> $param_name
#> [1] "bmi"
#> 
#> $mean
#> [1] 25.13926
#> 
#> $sd
#> [1] 4.057264

Add Session Info 

sessionInfo()
#> R version 4.5.1 (2025-06-13)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 24.04.3 LTS
#> 
#> Matrix products: default
#> BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0
#> 
#> locale:
#>  [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
#>  [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
#>  [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
#> [10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   
#> 
#> time zone: UTC
#> tzcode source: system (glibc)
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> other attached packages:
#> [1] demoProject1_0.0.0.9000
#> 
#> loaded via a namespace (and not attached):
#>  [1] digest_0.6.37     desc_1.4.3        R6_2.6.1          fastmap_1.2.0    
#>  [5] xfun_0.53         cachem_1.1.0      knitr_1.50        htmltools_0.5.8.1
#>  [9] rmarkdown_2.29    lifecycle_1.0.4   cli_3.6.5         sass_0.4.10      
#> [13] pkgdown_2.1.3     textshaping_1.0.3 jquerylib_0.1.4   systemfonts_1.2.3
#> [17] compiler_4.5.1    tools_4.5.1       ragg_1.5.0        evaluate_1.0.5   
#> [21] bslib_0.9.0       yaml_2.3.10       jsonlite_2.0.0    rlang_1.1.6      
#> [25] fs_1.6.6          htmlwidgets_1.6.4